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Conflicts in mitochondrial phylogenomics of Branchiopoda, with the first complete mitogenome of Laevicaudata (Crustacea: Branchiopoda) 期刊论文
Current Issues in Molecular Biolology, 2023, 卷号: 45, 期号: 2, 页码: 820-837
Authors:  Sun Xiaoyan（孙晓燕）;  Cheng Jinhui（程金辉）
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Phylogenomic Analyses of the Tenthredinoidea Support the Familial Rank of Athaliidae (Insecta, Tenthredinoidea) 期刊论文
INSECTS, 2022, 卷号: 13, 期号: 10, 页码: 23
Authors:  Niu, Gengyun;  Budak, Mahir;  Korkmaz, Ertan Mahir;  Dogan, Ozgul;  Nel, Andre;  Wan, Siying;  Cai, Chenyang（蔡晨阳）;  Jouault, Corentin;  Li, Min;  Wei, Meicai
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Tenthredinidae  phylogeny  rare genomic changes  gene rearrangement  RNA secondary structure  
Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) 期刊论文
GENES, 2022, 卷号: 13, 期号: 10, 页码: 12
Authors:  Sun, Xiaoyan（孙晓燕）;  Cheng, Jinhui（陈金辉）
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Thamnocephalidae  mitochondrial genome  phylogeny  non-monophyly of Branchinella  
Earliest fossil record of Corylophidae from Burmese amber and phylogeny of Corylophidae (Coleoptera: Coccinelloidea) 期刊论文
ARTHROPOD SYSTEMATICS & PHYLOGENY, 2022, 卷号: 80, 页码: 411-422
Authors:  Li, Yan-Da;  Zhang, Yu-Bo;  Szawaryn, Karol;  Huang, Di-Ying（黄迪颖）;  Cai, Chen-Yang（蔡晨阳）
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Corylophidae  Mesozoic  Myanmar  site-heterogeneous model  constrained phylogentic analysis  
Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil 期刊论文
PLANTS-BASEL, 2022, 卷号: 11, 期号: 12, 页码: 14
Authors:  Shu, Jiang-Ping;  Wang, Hao;  Shen, Hui;  Wang, Rui-Jiang;  Fu, Qiang（傅强）;  Wang, Yong-Dong（王永栋）;  Jiao, Yuan-Nian;  Yan, Yue-Hong
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ancient polyploidization  ancient radiation  reticulate evolution  mass extinction  ferns  phylogeny  1-to-1 orthologous genes  
A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 17
Authors:  Demeter, Fabrice;  Zanolli, Clement;  Westaway, Kira E.;  Joannes-Boyau, Renaud;  Duringer, Philippe;  Morley, Mike W.;  Welker, Frido;  Ruther, Patrick L.;  Skinner, Matthew M.;  McColl, Hugh;  Gaunitz, Charleen;  Vinner, Lasse;  Dunn, Tyler E.;  Olsen, Jesper V.;  Sikora, Martin;  Ponche, Jean-Luc;  Suzzoni, Eric;  Frangeul, Sebastien;  Boesch, Quentin;  Antoine, Pierre-Olivier;  Pan, Lei;  Xing, Song;  Zhao, Jian-Xin;  Bailey, Richard M.;  Boualaphane, Souliphane;  Sichanthongtip, Phonephanh;  Sihanam, Daovee;  Patole-Edoumba, Elise;  Aubaile, Francoise;  Crozier, Francoise;  Bourgon, Nicolas;  Zachwieja, Alexandra;  Luangkhoth, Thonglith;  Souksavatdy, Viengkeo;  Sayavongkhamdy, Thongsa;  Cappellini, Enrico;  Bacon, Anne-Marie;  Hublin, Jean-Jacques;  Willerslev, Eske;  Shackelford, Laura
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Phylogeny and Biogeographic History of Parnassius Butterflies (Papilionidae: Parnassiinae) Reveal Their Origin and Deep Diversification in West China 期刊论文
INSECTS, 2022, 卷号: 13, 期号: 5, 页码: 17
Authors:  Zhao, Youjie;  He, Bo;  Tao, Ruisong;  Su, Chengyong;  Ma, Junye（马俊业）;  Hao, Jiasheng;  Yang, Qun（杨群）
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genus Parnassius  mitochondrial genes  biogeographic history  phylogenetic network  Qinghai-Tibet Plateau  
Early cephalopod evolution clarified through Bayesian phylogenetic inference 期刊论文
BMC BIOLOGY, 2022, 卷号: 20, 期号: 1, 页码: 30
Authors:  Pohle, Alexander;  Kroeger, Bjoern;  Warnock, Rachel C. M.;  King, Andy H.;  Evans, David H.;  Aubrechtova, Martina;  Cichowolski, Marcela;  Fang, Xiang（方翔）;  Klug, Christian
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Cephalopoda  Phylogeny  Nautiloidea  Orthoceratoidea  Multiceratoidea  Endoceratoidea  Bayesian phylogenetics  Fossilized birth-death process  Posterior clade probabilities  Tree similarities  
Integrated phylogenomics and fossil data illuminate the evolution of beetles 期刊论文
ROYAL SOCIETY OPEN SCIENCE, 2022, 卷号: 9, 期号: 3, 页码: 19
Authors:  Cai, Chenyang（蔡晨阳）;  Tihelka, Erik;  Giacomelli, Mattia;  Lawrence, John F.;  Kundrata, Robin;  Yamamoto, Shuhei;  Thayer, Margaret K.;  Newton, Alfred F.;  Leschen, Richard A. B.;  Gimmel, Matthew L.;  Lu, Liang;  Engel, Michael S.;  Bouchard, Patrice;  Huang, Diying（黄迪颖）;  Pisani, Davide;  Donoghue, Philip C. J.
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Coleoptera  classification  diversification  phylogenomics  substitution modelling  CAT-GTR  
Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time 期刊论文
SYSTEMIC BIOLOGY, 2022, 页码: 9
Authors:  Yu, Daoyuan;  Ding, Yinhuan;  Tihelka, Erik;  Cai, Chenyang（蔡晨阳）;  Hu, Feng;  Liu, Manqiang;  Zhang, Feng
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Collembola  phylogenomics  soil-living adaptation  whole-genome sequencing