Dispersal from the Qinghai-Tibet plateau by a high-altitude butterfly is associated with rapid expansion and reorganization of its genome

doi:10.1038/s41467-023-44023-2

NIGPAS OpenIR

	Dispersal from the Qinghai-Tibet plateau by a high-altitude butterfly is associated with rapid expansion and reorganization of its genome
通讯作者	Yang, Qun(qunyang@nigpas.ac.cn) ; Hao, Jiasheng(jshaonigpas@sina.com)
	Zhao, Youjie 1,2; Su, Chengyong 1; He, Bo 1; Nie, Ruie 1; Wang, Yunliang 1; Ma, Junye3 ; Song, Jingyu 4; Yang, Qun3,5 ; Hao, Jiasheng 1
	2023-12-11
发表期刊	NATURE COMMUNICATIONS
卷号	14 期号:1 页码:13
摘要	Parnassius glacialis is a typical "Out of theQTP" alpine butterfly that originated on the Qinghai-Tibet Plateau (QTP) and dispersed into relatively low-altitude mountainous. Here we assemble a chromosome-level genome of P. glacialis and resequence 9 populations in order to explore the genome evolution and local adaptation of this species. These results indicated that the rapid accumulation and slow unequal recombination of transposable elements (TEs) contributed to the formation of its large genome. Several ribosomal gene families showed extensive expansion and selective evolution through transposon-mediated processed pseudogenes. Additionally, massive structural variations (SVs) ofTEs affected the genetic differentiation of low-altitude populations. These low-altitude populationsmight have experienced a genetic bottleneck in the past and harbor genes with selective signatureswhichmay be responsible for the potential adaptation to low-altitude environments. These results provide a foundation for understanding genome evolution and local adaptation for "Out of the QTP" of P. glacialis.
DOI	10.1038/s41467-023-44023-2
收录类别	SCI
语种	英语
关键词[WOS]	TRANSPOSABLE ELEMENTS ; PHYLOGENETIC ANALYSIS ; GENE PREDICTION ; EVOLUTION ; ALIGNMENT ; TOOL ; STRESS ; IDENTIFICATION ; PLEISTOCENE ; RADIATION
资助项目	National Science Foundation of China[41972029] ; National Science Foundation of China[31960142] ; CAS Strategic Priority Research Program[XDB26010204] ; State Key Laboratory of Paleobiology and Stratigraphy (Nanjing Institute of Geology and Paleontology, CAS)[Y626040108] ; National Science Foundation of Anhui[KJ2021A0100]
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:001186969900005
项目资助者	National Science Foundation of China ; CAS Strategic Priority Research Program ; State Key Laboratory of Paleobiology and Stratigraphy (Nanjing Institute of Geology and Paleontology, CAS) ; National Science Foundation of Anhui
出版者	NATURE PORTFOLIO
文献类型	期刊论文
条目标识符	http://ir.nigpas.ac.cn/handle/332004/43341
专题	中国科学院南京地质古生物研究所
通讯作者	Yang, Qun; Hao, Jiasheng
作者单位	1.Anhui Normal Univ, Coll Life Sci, Wuhu 241000, Peoples R China 2.Southwest Forestry Univ, Coll Big Data & Intelligent Engn, Kunming 650224, Yunnan, Peoples R China 3.Chinese Acad Sci, Nanjing Inst Geol & Paleontol, Ctr Excellence Life & Palaeoenvironm, State Key Lab Palaeobiol & Stratig, Nanjing 210008, Peoples R China 4.Shandong Agr Univ, Coll Anim Sci, Tai An 271000, Shandong, Peoples R China 5.Univ Chinese Acad Sci, Nanjing Coll, Nanjing 211135, Peoples R China
推荐引用方式 GB/T 7714	Zhao, Youjie,Su, Chengyong,He, Bo,et al. Dispersal from the Qinghai-Tibet plateau by a high-altitude butterfly is associated with rapid expansion and reorganization of its genome[J]. NATURE COMMUNICATIONS,2023,14(1):13.
APA	Zhao, Youjie.,Su, Chengyong.,He, Bo.,Nie, Ruie.,Wang, Yunliang.,...&Hao, Jiasheng.(2023).Dispersal from the Qinghai-Tibet plateau by a high-altitude butterfly is associated with rapid expansion and reorganization of its genome.NATURE COMMUNICATIONS,14(1),13.
MLA	Zhao, Youjie,et al."Dispersal from the Qinghai-Tibet plateau by a high-altitude butterfly is associated with rapid expansion and reorganization of its genome".NATURE COMMUNICATIONS 14.1(2023):13.