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Integrated phylogenomics and fossil data illuminate the evolution of beetles
Cai, Chenyang(蔡晨阳)1,2,3; Tihelka, Erik1,2,3; Giacomelli, Mattia4; Lawrence, John F.5; Kundrata, Robin6; Yamamoto, Shuhei7; Thayer, Margaret K.8; Newton, Alfred F.8; Leschen, Richard A. B.9; Gimmel, Matthew L.10
2022-03-23
Source PublicationROYAL SOCIETY OPEN SCIENCE
ISSN2054-5703
Volume9Issue:3Pages:19
Abstract

Beetles constitute the most biodiverse animal order with over 380 000 described species and possibly several million more yet unnamed. Recent phylogenomic studies have arrived at considerably incongruent topologies and widely varying estimates of divergence dates for major beetle clades. Here, we use a dataset of 68 single-copy nuclear protein-coding (NPC) genes sampling 129 out of the 193 recognized extant families as well as the first comprehensive set of fully justified fossil calibrations to recover a refined timescale of beetle evolution. Using phylogenetic methods that counter the effects of compositional and rate heterogeneity, we recover a topology congruent with morphological studies, which we use, combined with other recent phylogenomic studies, to propose several formal changes in the classification of Coleoptera: Scirtiformia and Scirtoidea sensu nov., Clambiformia ser. nov. and Clamboidea sensu nov., Rhinorhipiformia ser. nov., Byrrhoidea sensu nov., Dryopoidea stat. res., Nosodendriformia ser. nov. and Staphyliniformia sensu nov., and Erotyloidea stat. nov., Nitiduloidea stat. nov. and Cucujoidea sensu nov., alongside changes below the superfamily level. Our divergence time analyses recovered a late Carboniferous origin of Coleoptera, a late Palaeozoic origin of all modern beetle suborders and a Triassic-Jurassic origin of most extant families, while fundamental divergences within beetle phylogeny did not coincide with the hypothesis of a Cretaceous Terrestrial Revolution.

KeywordColeoptera classification diversification phylogenomics substitution modelling CAT-GTR
DOI10.1098/rsos.211771
Indexed BySCI
Language英语
WOS KeywordCOMPOSITIONAL HETEROGENEITY ; PHYLOGENETIC-RELATIONSHIPS ; MORPHOLOGICAL CHARACTERS ; COMPREHENSIVE PHYLOGENY ; MITOCHONDRIAL GENOMES ; MOLECULAR PHYLOGENY ; BAYESIAN-ESTIMATION ; INSECTA COLEOPTERA ; DIVERGENCE TIMES ; PERMIAN BEETLE
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000779916300009
PublisherROYAL SOC
Document Type期刊论文
Identifierhttp://ir.nigpas.ac.cn/handle/332004/40723
Collection中国科学院南京地质古生物研究所
Corresponding AuthorCai, Chenyang(蔡晨阳); Tihelka, Erik; Donoghue, Philip C. J.
Affiliation1.Chinese Acad Sci, Nanjing Inst Geol & Palaeontol, State Key Lab Palaeobiol & Stratig, Nanjing 210008, Peoples R China
2.Chinese Acad Sci, Ctr Excellence Life & Paleoenvironm, Nanjing 210008, Peoples R China
3.Univ Bristol, Sch Earth Sci, Life Sci Bldg,Tyndall Ave, Bristol BS8 1TQ, Avon, England
4.Univ Bristol, Sch Biol Sci, Life Sci Bldg,Tyndall Ave, Bristol BS8 1TQ, Avon, England
5.CSIRO, Australian Natl Insect Collect, GPO Box 1700, Canberra, ACT 2601, Australia
6.Palacky Univ, Fac Sci, Dept Zool, 17 Listopadu 50, Olomouc 77146, Czech Republic
7.Hokkaido Univ, Hokkaido Univ Museum, Kita Ku, Kita 8,Nishi 5, Sapporo, Hokkaido 0600808, Japan
8.Field Museum Nat Hist, Negaunee Integrat Res Ctr, 1400 S Lake Shore Dr, Chicago, IL 60605 USA
9.New Zealand Arthropod Collect, Manaaki Whenua Landcare Res, Private Bag 92170, Auckland, New Zealand
10.Santa Barbara Museum Nat Hist, Invertebrate Zool Dept, 2559 Puesta Sol Rd, Santa Barbara, CA 93105 USA
First Author AffilicationNanjing Institute of Geology and Palaeonotology,CAS
Corresponding Author AffilicationNanjing Institute of Geology and Palaeonotology,CAS
Recommended Citation
GB/T 7714
Cai, Chenyang,Tihelka, Erik,Giacomelli, Mattia,et al. Integrated phylogenomics and fossil data illuminate the evolution of beetles[J]. ROYAL SOCIETY OPEN SCIENCE,2022,9(3):19.
APA Cai, Chenyang.,Tihelka, Erik.,Giacomelli, Mattia.,Lawrence, John F..,Kundrata, Robin.,...&Donoghue, Philip C. J..(2022).Integrated phylogenomics and fossil data illuminate the evolution of beetles.ROYAL SOCIETY OPEN SCIENCE,9(3),19.
MLA Cai, Chenyang,et al."Integrated phylogenomics and fossil data illuminate the evolution of beetles".ROYAL SOCIETY OPEN SCIENCE 9.3(2022):19.
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