NIGPAS OpenIR
Integrated phylogenomics and fossil data illuminate the evolution of beetles
Cai, Chenyang(蔡晨阳)1,2,3; Tihelka, Erik1,2,3; Giacomelli, Mattia4; Lawrence, John F.5; Kundrata, Robin6; Yamamoto, Shuhei7; Thayer, Margaret K.8; Newton, Alfred F.8; Leschen, Richard A. B.9; Gimmel, Matthew L.10
2022-03-23
发表期刊ROYAL SOCIETY OPEN SCIENCE
ISSN2054-5703
卷号9期号:3页码:19
摘要

Beetles constitute the most biodiverse animal order with over 380 000 described species and possibly several million more yet unnamed. Recent phylogenomic studies have arrived at considerably incongruent topologies and widely varying estimates of divergence dates for major beetle clades. Here, we use a dataset of 68 single-copy nuclear protein-coding (NPC) genes sampling 129 out of the 193 recognized extant families as well as the first comprehensive set of fully justified fossil calibrations to recover a refined timescale of beetle evolution. Using phylogenetic methods that counter the effects of compositional and rate heterogeneity, we recover a topology congruent with morphological studies, which we use, combined with other recent phylogenomic studies, to propose several formal changes in the classification of Coleoptera: Scirtiformia and Scirtoidea sensu nov., Clambiformia ser. nov. and Clamboidea sensu nov., Rhinorhipiformia ser. nov., Byrrhoidea sensu nov., Dryopoidea stat. res., Nosodendriformia ser. nov. and Staphyliniformia sensu nov., and Erotyloidea stat. nov., Nitiduloidea stat. nov. and Cucujoidea sensu nov., alongside changes below the superfamily level. Our divergence time analyses recovered a late Carboniferous origin of Coleoptera, a late Palaeozoic origin of all modern beetle suborders and a Triassic-Jurassic origin of most extant families, while fundamental divergences within beetle phylogeny did not coincide with the hypothesis of a Cretaceous Terrestrial Revolution.

关键词Coleoptera classification diversification phylogenomics substitution modelling CAT-GTR
DOI10.1098/rsos.211771
收录类别SCI
语种英语
关键词[WOS]COMPOSITIONAL HETEROGENEITY ; PHYLOGENETIC-RELATIONSHIPS ; MORPHOLOGICAL CHARACTERS ; COMPREHENSIVE PHYLOGENY ; MITOCHONDRIAL GENOMES ; MOLECULAR PHYLOGENY ; BAYESIAN-ESTIMATION ; INSECTA COLEOPTERA ; DIVERGENCE TIMES ; PERMIAN BEETLE
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000779916300009
出版者ROYAL SOC
文献类型期刊论文
条目标识符http://ir.nigpas.ac.cn/handle/332004/40723
专题中国科学院南京地质古生物研究所
通讯作者Cai, Chenyang(蔡晨阳); Tihelka, Erik; Donoghue, Philip C. J.
作者单位1.Chinese Acad Sci, Nanjing Inst Geol & Palaeontol, State Key Lab Palaeobiol & Stratig, Nanjing 210008, Peoples R China
2.Chinese Acad Sci, Ctr Excellence Life & Paleoenvironm, Nanjing 210008, Peoples R China
3.Univ Bristol, Sch Earth Sci, Life Sci Bldg,Tyndall Ave, Bristol BS8 1TQ, Avon, England
4.Univ Bristol, Sch Biol Sci, Life Sci Bldg,Tyndall Ave, Bristol BS8 1TQ, Avon, England
5.CSIRO, Australian Natl Insect Collect, GPO Box 1700, Canberra, ACT 2601, Australia
6.Palacky Univ, Fac Sci, Dept Zool, 17 Listopadu 50, Olomouc 77146, Czech Republic
7.Hokkaido Univ, Hokkaido Univ Museum, Kita Ku, Kita 8,Nishi 5, Sapporo, Hokkaido 0600808, Japan
8.Field Museum Nat Hist, Negaunee Integrat Res Ctr, 1400 S Lake Shore Dr, Chicago, IL 60605 USA
9.New Zealand Arthropod Collect, Manaaki Whenua Landcare Res, Private Bag 92170, Auckland, New Zealand
10.Santa Barbara Museum Nat Hist, Invertebrate Zool Dept, 2559 Puesta Sol Rd, Santa Barbara, CA 93105 USA
第一作者单位中国科学院南京地质古生物研究所
通讯作者单位中国科学院南京地质古生物研究所
推荐引用方式
GB/T 7714
Cai, Chenyang,Tihelka, Erik,Giacomelli, Mattia,et al. Integrated phylogenomics and fossil data illuminate the evolution of beetles[J]. ROYAL SOCIETY OPEN SCIENCE,2022,9(3):19.
APA Cai, Chenyang.,Tihelka, Erik.,Giacomelli, Mattia.,Lawrence, John F..,Kundrata, Robin.,...&Donoghue, Philip C. J..(2022).Integrated phylogenomics and fossil data illuminate the evolution of beetles.ROYAL SOCIETY OPEN SCIENCE,9(3),19.
MLA Cai, Chenyang,et al."Integrated phylogenomics and fossil data illuminate the evolution of beetles".ROYAL SOCIETY OPEN SCIENCE 9.3(2022):19.
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