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Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages
Zhang, Qi-Lin1,2; Wang, Feng1; Guo, Jun1; Deng, Xian-Yu1; Chen, Jun-Yuan (陈均远)2,3; Lin, Lian-Bing1
2018-06-05
Source PublicationSCIENTIFIC DATA
ISSN2052-4463
Volume5Pages:9
Abstract

Henosepilachna vigintioctopunctata is a vegetable pest that has spread worldwide. It belongs to the Coccinellidae family, whose members exhibit remarkable diversity, both in terms of their diets and the colored spots that appear on the elytra in the adult stage. Transcriptomic data from H. vigintioctopunctata at different life stages would be useful for further investigating the genetic basis of this dietary diversity and the formation of the colored spots in ladybird beetles, as well as revealing the population dynamics of H. vigintioctopunctata, which could be useful in pest control. Here, we generated a comprehensive RNA-seq data set (a total of similar to 24 Gb of clean data) for H. vigintioctopunctata by sequencing samples collected at different life stages. We characterized the transcriptomes of each of the four life stages (egg, larva, pupa, adult) and generated a high- coverage pool by combining all the RNA- seq reads. Furthermore, we identified a catalog of simple sequence repeat (SSR) markers. This represents the first study to collect transcriptome data from all life stages of a ladybird beetle.

DOI10.1038/sdata.2018.93
Language英语
WOS KeywordDe-novo Transcriptome ; Rna-seq ; Genome ; Annotation ; Beetles ; Adaptation ; Evolution ; Insights
Funding ProjectNanjing University[201702B075] ; Natural Science Foundation of China[31760042] ; Natural Science Foundation of China[41272008]
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000434132200001
Funding OrganizationNanjing University ; Natural Science Foundation of China
PublisherNATURE PUBLISHING GROUP
Citation statistics
Document Type期刊论文
Identifierhttp://ir.nigpas.ac.cn/handle/332004/18685
Collection中国科学院南京地质古生物研究所
其他
Corresponding AuthorChen, Jun-Yuan (陈均远); Lin, Lian-Bing
Affiliation1.Kunming Univ Sci & Technol, Fac Life Sci & Technol, Kunming 650500, Yunnan, Peoples R China
2.Nanjing Univ, Sch Life Sci, State Key Lab Pharmaceut Biotechnol, Nanjing 210023, Jiangsu, Peoples R China
3.Chinese Acad Sci, Nanjing Inst Geol & Paleontol, LPS, Nanjing 210008, Jiangsu, Peoples R China
Recommended Citation
GB/T 7714
Zhang, Qi-Lin,Wang, Feng,Guo, Jun,et al. Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages[J]. SCIENTIFIC DATA,2018,5:9.
APA Zhang, Qi-Lin,Wang, Feng,Guo, Jun,Deng, Xian-Yu,Chen, Jun-Yuan ,&Lin, Lian-Bing.(2018).Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages.SCIENTIFIC DATA,5,9.
MLA Zhang, Qi-Lin,et al."Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages".SCIENTIFIC DATA 5(2018):9.
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