NIGPAS OpenIR
Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages
Zhang, Qi-Lin1,2; Wang, Feng1; Guo, Jun1; Deng, Xian-Yu1; Chen, Jun-Yuan (陈均远)2,3; Lin, Lian-Bing1
2018-06-05
发表期刊SCIENTIFIC DATA
ISSN2052-4463
卷号5页码:9
摘要

Henosepilachna vigintioctopunctata is a vegetable pest that has spread worldwide. It belongs to the Coccinellidae family, whose members exhibit remarkable diversity, both in terms of their diets and the colored spots that appear on the elytra in the adult stage. Transcriptomic data from H. vigintioctopunctata at different life stages would be useful for further investigating the genetic basis of this dietary diversity and the formation of the colored spots in ladybird beetles, as well as revealing the population dynamics of H. vigintioctopunctata, which could be useful in pest control. Here, we generated a comprehensive RNA-seq data set (a total of similar to 24 Gb of clean data) for H. vigintioctopunctata by sequencing samples collected at different life stages. We characterized the transcriptomes of each of the four life stages (egg, larva, pupa, adult) and generated a high- coverage pool by combining all the RNA- seq reads. Furthermore, we identified a catalog of simple sequence repeat (SSR) markers. This represents the first study to collect transcriptome data from all life stages of a ladybird beetle.

DOI10.1038/sdata.2018.93
语种英语
关键词[WOS]De-novo Transcriptome ; Rna-seq ; Genome ; Annotation ; Beetles ; Adaptation ; Evolution ; Insights
资助项目Nanjing University[201702B075] ; Natural Science Foundation of China[31760042] ; Natural Science Foundation of China[41272008]
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000434132200001
项目资助者Nanjing University ; Natural Science Foundation of China
出版者NATURE PUBLISHING GROUP
文献类型期刊论文
条目标识符http://ir.nigpas.ac.cn/handle/332004/18685
专题中国科学院南京地质古生物研究所
其他
通讯作者Chen, Jun-Yuan (陈均远); Lin, Lian-Bing
作者单位1.Kunming Univ Sci & Technol, Fac Life Sci & Technol, Kunming 650500, Yunnan, Peoples R China
2.Nanjing Univ, Sch Life Sci, State Key Lab Pharmaceut Biotechnol, Nanjing 210023, Jiangsu, Peoples R China
3.Chinese Acad Sci, Nanjing Inst Geol & Paleontol, LPS, Nanjing 210008, Jiangsu, Peoples R China
推荐引用方式
GB/T 7714
Zhang, Qi-Lin,Wang, Feng,Guo, Jun,et al. Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages[J]. SCIENTIFIC DATA,2018,5:9.
APA Zhang, Qi-Lin,Wang, Feng,Guo, Jun,Deng, Xian-Yu,Chen, Jun-Yuan ,&Lin, Lian-Bing.(2018).Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages.SCIENTIFIC DATA,5,9.
MLA Zhang, Qi-Lin,et al."Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages".SCIENTIFIC DATA 5(2018):9.
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